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    LOC4333350 mediator of RNA polymerase II transcription subunit 15 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333350, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4333350
    Gene description
    mediator of RNA polymerase II transcription subunit 15
    Locus tag
    OSNPB_030588200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4333350 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (22591393..22596433)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (21732990..21738083)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276346 Neighboring gene uncharacterized LOC107280241 Neighboring gene serine/threonine/tyrosine-protein kinase HT1 Neighboring gene uncharacterized LOC4333351

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    mediator of RNA polymerase II transcription subunit 15
    Names
    Os03g0588200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      22591393..22596433
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777124.3 → XP_015632610.1  mediator of RNA polymerase II transcription subunit 15

      UniProtKB/TrEMBL
      A0A8J8XTT6, A2XJ07, A3AK06, Q0DQJ7, Q10HH4
      Conserved Domains (2) summary
      TIGR00927
      Location:179 → 304
      2A1904; K+-dependent Na+/Ca+ exchanger
      pfam07899
      Location:294 → 572
      Frigida; Frigida-like protein
    Nucleotide Protein
    Heading Accession and Version

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