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    LOC4333958 uncharacterized LOC4333958 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333958, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4333958
    Gene description
    uncharacterized LOC4333958
    Locus tag
    OSNPB_030724700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    NAL22
    Expression
    Biased expression in roots before flowering (RPKM 13.2), roots after flowering (RPKM 5.8) and 3 other tissues See more
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    Genomic context

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    See LOC4333958 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (30336106..30341803)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (29454900..29457146)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4333956 Neighboring gene uncharacterized LOC4333957 Neighboring gene uncharacterized LOC4333959 Neighboring gene large ribosomal subunit protein uL6m Neighboring gene FIP1[V]-like protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleoside triphosphate diphosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4333958
    Names
    Os03g0724700
    maf-like protein DDB_G0281937

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      30336106..30341803
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773333.3 → XP_015628819.2  uncharacterized protein LOC4333958 isoform X4

    2. XM_066308910.1 → XP_066165007.1  uncharacterized protein LOC4333958 isoform X2

    3. XM_066308911.1 → XP_066165008.1  uncharacterized protein LOC4333958 isoform X3

    4. XM_015773334.3 → XP_015628820.1  uncharacterized protein LOC4333958 isoform X5

      UniProtKB/TrEMBL
      Q0DP00, Q10DP5, Q75GV5
      Conserved Domains (1) summary
      pfam02545
      Location:18 → 211
      Maf; Maf-like protein

    5. XM_015774153.3 → XP_015629639.2  uncharacterized protein LOC4333958 isoform X1

    RNA

    1. XR_010740269.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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