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    LOC4333965 transcription factor bHLH18 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333965, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4333965
    Gene description
    transcription factor bHLH18
    Locus tag
    OSNPB_030725800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 27.3), flowers (RPKM 25.8) and 5 other tissues See more
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    Genomic context

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    See LOC4333965 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (30397723..30400158)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (29516645..29519085)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene lariat debranching enzyme-like Neighboring gene COMPASS-like H3K4 histone methylase component WDR5A Neighboring gene uncharacterized LOC107276301 Neighboring gene tubulin alpha-1 chain

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor bHLH18
    Names
    Os03g0725800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      30397723..30400158
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772363.3 → XP_015627849.1  transcription factor bHLH18

      UniProtKB/TrEMBL
      A0A0P0W350, A2XLK7, Q75GI1
      Conserved Domains (1) summary
      cd11452
      Location:180 → 251
      bHLH_AtNAI1_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein NAI1 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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