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    LOC4333985 probable zinc metalloprotease EGY3, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333985, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4333985
    Gene description
    probable zinc metalloprotease EGY3, chloroplastic
    Locus tag
    OSNPB_030729000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    EGY3; OsEGY3; OsJ_12438
    Expression
    Broad expression in roots after flowering (RPKM 9.1), leaves after flowering (RPKM 7.7) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (30665828..30668411, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (29784593..29787234, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene DEAD-box ATP-dependent RNA helicase 16-like Neighboring gene transcription factor bHLH74 Neighboring gene uncharacterized LOC4333986 Neighboring gene thioredoxin-like protein AAED1, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    probable zinc metalloprotease EGY3, chloroplastic
    Names
    LOC_Os03g51920
    OSJNBb0011H13.3
    Protein ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 3
    NP_001405559.1
    XP_015627826.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001418630.1 → NP_001405559.1  probable zinc metalloprotease EGY3, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK108046, AP014959, CI145405
      UniProtKB/Swiss-Prot
      A0A0P0W2J2, A2XLM6, Q851F9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      30665828..30668411 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772340.3 → XP_015627826.1  probable zinc metalloprotease EGY3, chloroplastic isoform X1

      UniProtKB/Swiss-Prot
      A2XLM6
      Conserved Domains (1) summary
      cd06160
      Location:294 → 536
      S2P-M50_like_2; Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q851F9.1 GenPept UniProtKB/Swiss-Prot:Q851F9

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