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    LOC4334298 protein FAR1-RELATED SEQUENCE 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334298, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334298
    Gene description
    protein FAR1-RELATED SEQUENCE 6
    Locus tag
    OSNPB_030777700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 25.4), leaves after flowering (RPKM 19.1) and 6 other tissues See more
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    Genomic context

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    See LOC4334298 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (33223275..33229265, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (32251801..32257971, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4334296 Neighboring gene uncharacterized LOC4334297 Neighboring gene calmodulin-binding protein 60 B Neighboring gene photosystem I reaction center subunit III, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein FAR1-RELATED SEQUENCE 6
    Names
    Os03g0777700
    protein FAR1-RELATED SEQUENCE 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      33223275..33229265 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775435.3 → XP_015630921.1  protein FAR1-RELATED SEQUENCE 6 isoform X2

      Conserved Domains (4) summary
      smart00575
      Location:907 → 932
      ZnF_PMZ; plant mutator transposase zinc finger
      PLN03097
      Location:398 → 994
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      pfam03101
      Location:429 → 513
      FAR1; FAR1 DNA-binding domain
      pfam10551
      Location:629 → 709
      MULE; MULE transposase domain

    2. XM_015775434.3 → XP_015630920.1  protein FAR1-RELATED SEQUENCE 6 isoform X1

      UniProtKB/TrEMBL
      B9F5Z5, Q8S7I2
      Conserved Domains (3) summary
      PLN03097
      Location:398 → 994
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      pfam15258
      Location:1071 → 1173
      FAM222A; Protein family of FAM222A
      cl40636
      Location:53 → 82
      FAR1; FAR1 DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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