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    LOC4334398 cupincin-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334398, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4334398
    Gene description
    cupincin-like
    Locus tag
    OSNPB_030793700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in mature seeds (RPKM 883.9) and milk grains (RPKM 423.4) See more
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    Genomic context

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    See LOC4334398 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (33992019..33994933)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (33020024..33022874)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene casein kinase 1-like protein HD16 Neighboring gene type IV inositol polyphosphate 5-phosphatase 7 Neighboring gene non-specific lipid transfer protein GPI-anchored 5 Neighboring gene non-specific lipid transfer protein GPI-anchored 20

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Conformational study of globulin from rice (Oryza sativa) seeds by Fourier-transform infrared spectroscopy. Ellepola SW, et al. Int J Biol Macromol, 2005 Oct 30. PMID 16140371
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. FTIR analysis of globulin from rice (Oryza sativa) seeds
      Title: Conformational study of globulin from rice (Oryza sativa) seeds by Fourier-transform infrared spectroscopy.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    General protein information

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    Preferred Names
    cupincin
    Names
    52 kDa globulin-like protein
    LOC_Os03g57960
    OSJNBb0060J21.10
    Os03g0793700
    globulin protein
    globulin-1
    globulin-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402303.1 → NP_001389232.1  cupincin precursor

      Status: VALIDATED

      Source sequence(s)
      AK121667, AY098743
      UniProtKB/Swiss-Prot
      B8AL97, Q852L2, Q8L8I0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      33992019..33994933
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q852L2.2 GenPept UniProtKB/Swiss-Prot:Q852L2

    Gene LinkOut

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