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    LOC4334814 pentatricopeptide repeat-containing protein At4g25270, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334814, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4334814
    Gene description
    pentatricopeptide repeat-containing protein At4g25270, chloroplastic
    Locus tag
    OSNPB_030852700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4334814 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (36879513..36881829, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (35901246..35903080, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene predicted GPI-anchored protein 58 Neighboring gene uncharacterized LOC4334812 Neighboring gene uncharacterized protein ycf20 Neighboring gene non-specific phospholipase C4 Neighboring gene cleavage and polyadenylation specificity factor subunit 3-I

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At4g25270, chloroplastic
    Names
    Os03g0852700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      36879513..36881829 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777436.3 → XP_015632922.1  pentatricopeptide repeat-containing protein At4g25270, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0W5L6, A0A0P0W5U5, Q0DLP8, Q851X3
      Conserved Domains (2) summary
      PLN03081
      Location:112 → 512
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      sd00004
      Location:145 → 171
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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