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    LOC4334975 subtilisin-like protease SBT3.9 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334975, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334975
    Gene description
    subtilisin-like protease SBT3.9
    Locus tag
    OSNPB_040121100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 16.1) and flower buds (RPKM 3.1) See more
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    Genomic context

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    See LOC4334975 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (1332526..1344513)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (1248358..1260334)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene subtilisin-like protease SBT3.9 Neighboring gene uncharacterized LOC136355977 Neighboring gene subtilisin-like protease SBT3.14 Neighboring gene subtilisin-like protease SBT3.9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    subtilisin-like protease SBT3.9
    Names
    Os04g0121100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      1332526..1344513
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779568.3 → XP_015635054.1  subtilisin-like protease SBT3.9

      UniProtKB/TrEMBL
      A3AQD6, Q01MA4, Q7XT44
      Conserved Domains (4) summary
      cd04852
      Location:113 → 569
      Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
      cd02120
      Location:346 → 470
      PA_subtilisin_like; Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, ...
      pfam05922
      Location:38 → 116
      Inhibitor_I9; Peptidase inhibitor I9
      pfam17766
      Location:643 → 740
      fn3_6; Fibronectin type-III domain
    Nucleotide Protein
    Heading Accession and Version

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