U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4335166 UDP-glycosyltransferase 79-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335166, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4335166
    Gene description
    UDP-glycosyltransferase 79-like
    Locus tag
    OSNPB_040206200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 30.4), leaves before flowering (RPKM 27.7) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4335166 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (7240389..7255789, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (7135676..7159814, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356267 Neighboring gene disease resistance protein RGA4-like Neighboring gene UDP-glycosyltransferase 79 Neighboring gene senescence-specific cysteine protease SAG39 Neighboring gene UDP-glucosyltransferase UGT13248 Neighboring gene UDP-glycosyltransferase 79

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables quercetin 3-O-glucosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables quercetin 7-O-glucosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in detoxification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    UDP-glycosyltransferase 79-like
    Names
    Os04g0206200
    Os04g0206450
    Os04g0206600
    UDP-glycosyltransferase 74E2
    UDP-glycosyltransferase 74F2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      7240389..7255789 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309315.1 → XP_066165412.1  UDP-glycosyltransferase 79-like

      UniProtKB/TrEMBL
      B7F2D5

    RNA

    1. XR_010740624.1 RNA Sequence

    2. XR_010740622.1 RNA Sequence

    3. XR_010740621.1 RNA Sequence

    4. XR_010740619.1 RNA Sequence

    5. XR_010740623.1 RNA Sequence

    6. XR_010740620.1 RNA Sequence

    7. XR_010740618.1 RNA Sequence

    8. XR_010740617.1 RNA Sequence

    9. XR_010740616.1 RNA Sequence

    10. XR_010740626.1 RNA Sequence

    11. XR_010740625.1 RNA Sequence

    12. XR_001545345.3 RNA Sequence

    13. XR_010740628.1 RNA Sequence

    14. XR_010740627.1 RNA Sequence

    15. XR_001545339.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials