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    LOC9266763 small RNA-binding protein 11, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9266763, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9266763
    Gene description
    small RNA-binding protein 11, chloroplastic
    Locus tag
    OSNPB_040414300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC9266763 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (20868306..20869612)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (20484051..20485488)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene mitochondrial fission protein ELM1 Neighboring gene OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 6 Neighboring gene probable F-box protein At2g36090 Neighboring gene photosystem I subunit O

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small RNA-binding protein 11, chloroplastic
    Names
    Os04g0414300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      20868306..20869612
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778682.3 → XP_015634168.1  small RNA-binding protein 11, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A0P0WAK6
      Conserved Domains (1) summary
      smart00360
      Location:64 → 131
      RRM; RNA recognition motif

    2. XM_015778683.3 → XP_015634169.1  small RNA-binding protein 11, chloroplastic isoform X2

      UniProtKB/TrEMBL
      A0A0P0WAK6, Q01L95, Q7X8B2, Q7XSA4
      Conserved Domains (1) summary
      cd21608
      Location:38 → 113
      RRM2_NsCP33_like; RNA recognition motif 2 (RRM2) found in Nicotiana sylvestris chloroplastic 33 kDa ribonucleoprotein (NsCP33) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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