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    LOC4336245 phosphoglycolate phosphatase 1A, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336245, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336245
    Gene description
    phosphoglycolate phosphatase 1A, chloroplastic
    Locus tag
    OSNPB_040490800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4336245 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (25024817..25027421, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24527972..24530518, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene PTI1-like tyrosine-protein kinase 3 Neighboring gene CMP-sialic acid transporter 4-like Neighboring gene uncharacterized LOC4336244 Neighboring gene amino acid permease 3 Neighboring gene disease resistance protein RGA2 Neighboring gene uncharacterized LOC4336247

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphoglycolate phosphatase 1A, chloroplastic
    Names
    Os04g0490800
    phosphoglycolate phosphatase 1B, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      25024817..25027421 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781302.3 → XP_015636788.1  phosphoglycolate phosphatase 1A, chloroplastic

      UniProtKB/TrEMBL
      B8AVV2, Q01IU7, Q0JC56, Q7F985, Q7X7H3
      Conserved Domains (1) summary
      PLN02645
      Location:71 → 365
      PLN02645; phosphoglycolate phosphatase
    Nucleotide Protein
    Heading Accession and Version

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