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    LOC4337104 xyloglucan endotransglucosylase protein 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337104, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4337104
    Gene description
    xyloglucan endotransglucosylase protein 6
    Locus tag
    OSNPB_040631200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 37.6) and flower buds (RPKM 13.5) See more
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    Genomic context

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    See LOC4337104 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (32653365..32655142)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (32145665..32147458)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene anthocyanidin reductase ((2S)-flavan-3-ol-forming) Neighboring gene organic cation/carnitine transporter 4 Neighboring gene uncharacterized LOC112938651 Neighboring gene small nucleolar RNA U3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables xyloglucan:xyloglucosyl transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in xyloglucan metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cell wall IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    xyloglucan endotransglucosylase protein 6
    Names
    Os04g0631200
    xyloglucan endotransglucosylase/hydrolase protein 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      32653365..32655142
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778816.3 → XP_015634302.1  xyloglucan endotransglucosylase protein 6

      UniProtKB/TrEMBL
      A0A0P0WF80, A2XZC2, A3AXQ6, B7ENX5, Q5JQW6
      Conserved Domains (1) summary
      cd02176
      Location:25 → 316
      GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
    Nucleotide Protein
    Heading Accession and Version

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