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    LOC9271771 myb-related protein MYBAS1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9271771, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC9271771
    Gene description
    myb-related protein MYBAS1-like
    Locus tag
    OSNPB_050114700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC9271771 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (812656..815703)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (801092..803358)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene phragmoplastin interacting protein 1 Neighboring gene uncharacterized LOC9269365 Neighboring gene uncharacterized LOC107281148 Neighboring gene uncharacterized LOC112939048 Neighboring gene uncharacterized LOC4337615

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    myb-related protein MYBAS1-like; transcription factor MYB48

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      812656..815703
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311063.1 → XP_066167160.1  myb-related protein MYBAS1-like isoform X1

      UniProtKB/TrEMBL
      A2XZN8

    2. XM_015784067.3 → XP_015639553.1  transcription factor MYB48 isoform X2

      Conserved Domains (1) summary
      PLN03212
      Location:10 → 79
      PLN03212; Transcription repressor MYB5; Provisional
    Nucleotide Protein
    Heading Accession and Version

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