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    LOC4337815 protein SRC2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337815, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4337815
    Gene description
    protein SRC2
    Locus tag
    OSNPB_050149100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4337815 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (2820642..2821599, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (2806100..2807560, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene probable glutathione S-transferase GSTF1 Neighboring gene pectinesterase inhibitor 8-like Neighboring gene PWWP domain-containing protein 1 Neighboring gene uncharacterized LOC136356498 Neighboring gene 1-aminocyclopropane-1-carboxylate oxidase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in defense response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SRC2
    Names
    Os05g0149100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      2820642..2821599 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783421.3 → XP_015638907.1  protein SRC2

      UniProtKB/TrEMBL
      A0A0N7KK56, B9FMG3, Q65XE8
      Conserved Domains (1) summary
      cd04051
      Location:6 → 133
      C2_SRC2_like; C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins
    Nucleotide Protein
    Heading Accession and Version

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