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    LOC4338366 leucine-rich repeat receptor protein kinase HPCA1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338366, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338366
    Gene description
    leucine-rich repeat receptor protein kinase HPCA1
    Locus tag
    OSNPB_050305900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 40.9), roots after flowering (RPKM 21.4) and 6 other tissues See more
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    Genomic context

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    See LOC4338366 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (13913427..13919295)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (13834109..13839990)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein RGA2 Neighboring gene uncharacterized LOC4338365 Neighboring gene uncharacterized LOC4338367 Neighboring gene uncharacterized LOC136356640

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat receptor protein kinase HPCA1
    Names
    Os05g0305900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      13913427..13919295
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784189.3 → XP_015639675.1  leucine-rich repeat receptor protein kinase HPCA1

      UniProtKB/TrEMBL
      A0A0P0WKH3, B9FNS3
      Conserved Domains (3) summary
      PLN00113
      Location:46 → 875
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      cd14066
      Location:610 → 875
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:69 → 92
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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