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    LOC4338508 importin subunit beta-1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338508, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338508
    Gene description
    importin subunit beta-1
    Locus tag
    OSNPB_050353400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 25.2), roots before flowering (RPKM 18.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (16793655..16798356)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (16696771..16701580)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene tetrahydroberberine oxidase-like Neighboring gene pentatricopeptide repeat-containing protein At2g30100, chloroplastic Neighboring gene probable inactive receptor-like protein kinase At3g56050 Neighboring gene uncharacterized protein At5g39865

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Isolation and characterization of two importin-beta genes from rice. Matsuki R, et al. Plant Cell Physiol, 1998 Aug. PMID 9787463
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear import signal receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear localization sequence binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    importin subunit beta-1
    Names
    Os05g0353400
    importin-beta1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      16793655..16798356
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783792.3 → XP_015639278.1  importin subunit beta-1

      UniProtKB/TrEMBL
      A2Y3K8, B9FH83, Q5W766, Q9ZWR5
      Conserved Domains (2) summary
      COG5215
      Location:12 → 858
      KAP95; Karyopherin (importin) beta [Intracellular trafficking and secretion]
      sd00044
      Location:367 → 395
      HEAT; HEAT repeat [structural motif]

    2. XM_015783791.3 → XP_015639277.1  importin subunit beta-1

      UniProtKB/TrEMBL
      A2Y3K8, B9FH83, Q5W766, Q9ZWR5
      Conserved Domains (2) summary
      COG5215
      Location:12 → 858
      KAP95; Karyopherin (importin) beta [Intracellular trafficking and secretion]
      sd00044
      Location:367 → 395
      HEAT; HEAT repeat [structural motif]

    3. XM_015783794.3 → XP_015639280.1  importin subunit beta-1

      UniProtKB/TrEMBL
      A2Y3K8, B9FH83, Q5W766, Q9ZWR5
      Conserved Domains (2) summary
      COG5215
      Location:12 → 858
      KAP95; Karyopherin (importin) beta [Intracellular trafficking and secretion]
      sd00044
      Location:367 → 395
      HEAT; HEAT repeat [structural motif]

    4. XM_015783793.3 → XP_015639279.1  importin subunit beta-1

      UniProtKB/TrEMBL
      A2Y3K8, B9FH83, Q5W766, Q9ZWR5
      Conserved Domains (2) summary
      COG5215
      Location:12 → 858
      KAP95; Karyopherin (importin) beta [Intracellular trafficking and secretion]
      sd00044
      Location:367 → 395
      HEAT; HEAT repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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