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    LOC4338860 uncharacterized LOC4338860 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338860, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4338860
    Gene description
    uncharacterized LOC4338860
    Locus tag
    OSNPB_050427300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4338860 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (21052729..21056706, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (20948224..20951378, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4338857 Neighboring gene uncharacterized LOC4338858 Neighboring gene probable beta-1,3-galactosyltransferase 8 Neighboring gene phenylalanine ammonia-lyase Neighboring gene ankyrin repeat-containing protein NPR4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4338860
    Names
    Os05g0427300
    splicing factor 3B subunit 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      21052729..21056706 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066310596.1 → XP_066166693.1  uncharacterized protein LOC4338860

      UniProtKB/TrEMBL
      A0A0P0WMM9, A0A8J8Y7X5, B9FPQ4, Q0DI02

    2. XM_015784447.3 → XP_015639933.1  uncharacterized protein LOC4338860

      UniProtKB/TrEMBL
      A0A0P0WMM9, A0A8J8Y7X5, B8AYH7, B9FPQ4, Q0DI02
      Conserved Domains (1) summary
      cl17169
      Location:9 → 83
      RRM_SF; RNA recognition motif (RRM) superfamily

    RNA

    1. XR_010741426.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Research Materials