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    LOC4339075 protein MALE DISCOVERER 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339075, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339075
    Gene description
    protein MALE DISCOVERER 2
    Locus tag
    OSNPB_050471000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 30.7), roots after flowering (RPKM 15.0) and 6 other tissues See more
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    Genomic context

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    See LOC4339075 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (23226508..23230796, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (23112961..23117283, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4339073 Neighboring gene uncharacterized LOC4339074 Neighboring gene uncharacterized protein At5g39865 Neighboring gene transfer RNA glycine (anticodon UCC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein MALE DISCOVERER 2
    Names
    Os05g0471000
    probable LRR receptor-like serine/threonine-protein kinase MRH1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      23226508..23230796 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785107.3 → XP_015640593.1  protein MALE DISCOVERER 2 isoform X2

      UniProtKB/TrEMBL
      B8AZ37, Q6ATX3, Q6AUJ3
      Conserved Domains (4) summary
      PLN03150
      Location:56 → 160
      PLN03150; hypothetical protein; Provisional
      sd00033
      Location:76 → 96
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:27 → 68
      LRRNT_2; Leucine rich repeat N-terminal domain
      cl21453
      Location:356 → 599
      PKc_like; Protein Kinases, catalytic domain

    2. XM_015785106.3 → XP_015640592.1  protein MALE DISCOVERER 2 isoform X1

      UniProtKB/TrEMBL
      B8AZ37
      Conserved Domains (4) summary
      PLN03150
      Location:56 → 160
      PLN03150; hypothetical protein; Provisional
      sd00033
      Location:76 → 96
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:27 → 68
      LRRNT_2; Leucine rich repeat N-terminal domain
      cl21453
      Location:357 → 600
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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