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    LOC4339488 protein ANTHESIS POMOTING FACTOR 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339488, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4339488
    Gene description
    protein ANTHESIS POMOTING FACTOR 1
    Locus tag
    OSNPB_050543300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4339488 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (27081226..27084065)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (26962975..26965936)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene AP-1 complex subunit mu-2 Neighboring gene RAN GTPase-activating protein 1 Neighboring gene uncharacterized LOC136356447 Neighboring gene farnesyl pyrophosphate synthase Neighboring gene myb-related protein Hv33

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Set1C/COMPASS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein ANTHESIS POMOTING FACTOR 1
    Names
    Os05g0543300
    WD domain, G-beta repeat domain-containing protein
    WD repeat-containing protein 82

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      27081226..27084065
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782377.3 → XP_015637863.1  protein ANTHESIS POMOTING FACTOR 1

      UniProtKB/TrEMBL
      B8AW83, B9FLF0, Q0DGA6, Q65XN0
      Conserved Domains (2) summary
      sd00039
      Location:29 → 66
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:20 → 313
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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