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    LOC4339592 golgin candidate 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339592, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4339592
    Gene description
    golgin candidate 5
    Locus tag
    OSNPB_050559900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4339592 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (28053257..28062304, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (27868481..27877545, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene probable glucuronosyltransferase Os05g0559600 Neighboring gene transfer RNA serine (anticodon CGA) Neighboring gene photosystem I reaction center subunit VI, chloroplastic-like Neighboring gene rop guanine nucleotide exchange factor 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    golgin candidate 5
    Names
    Os05g0559900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      28053257..28062304 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066310617.1 → XP_066166714.1  golgin candidate 5 isoform X2

      UniProtKB/TrEMBL
      B8AWQ0

    2. XM_015784354.3 → XP_015639840.1  golgin candidate 5 isoform X1

      UniProtKB/TrEMBL
      B8AWQ0, Q688Z1, Q6AT30
      Conserved Domains (5) summary
      PRK13335
      Location:89 → 182
      PRK13335; superantigen-like protein SSL3; Reviewed
      PLN02939
      Location:329 → 576
      PLN02939; transferase, transferring glycosyl groups
      COG1196
      Location:468 → 852
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      PRK08581
      Location:72 → 304
      PRK08581; amidase domain-containing protein
      pfam12325
      Location:925 → 1021
      TMF_TATA_bd; TATA element modulatory factor 1 TATA binding
    Nucleotide Protein
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