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    LOC4339928 growth-regulating factor 5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339928, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4339928
    Gene description
    growth-regulating factor 5-like
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GRF5; grf3; OsGRF5
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    Genomic context

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    See LOC4339928 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (1049461..1052730, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (891994..896379, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4339926 Neighboring gene cyclin-dependent kinase F-4-like Neighboring gene syntaxin-43 Neighboring gene chloroplast protein FOR GROWTH AND FERTILITY 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Development of an efficient method for the isolation of factors involved in gene transcription during rice embryo development. Ye R, et al. Plant J, 2004 Apr. PMID 15078336
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in developmental process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    growth-regulating factor 5
    Names
    LOC_Os06g02560
    OSJNBa0019F11.24
    Transcription activator GRF5
    putative growth-regulating factor 1
    transcription activator GRF3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421007.1 → NP_001407936.1  growth-regulating factor 5 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK103508, CI139559, CI304440
      UniProtKB/Swiss-Prot
      Q6AWY4, Q70LH4
      UniProtKB/TrEMBL
      B8B1M9, B9FR76

    2. NM_001421008.1 → NP_001407937.1  growth-regulating factor 5 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK103508, CI049215, CI139559, CI304440
      UniProtKB/TrEMBL
      B9FR76

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      1049461..1052730 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786118.3 → XP_015641604.2  growth-regulating factor 5 isoform X2

      UniProtKB/TrEMBL
      B9FR76
      Conserved Domains (2) summary
      pfam08879
      Location:98 → 139
      WRC
      pfam08880
      Location:25 → 58
      QLQ

    2. XM_066311126.1 → XP_066167223.1  growth-regulating factor 5 isoform X3

      UniProtKB/TrEMBL
      B9FR76

    3. XM_015786116.3 → XP_015641602.1  growth-regulating factor 5 isoform X1

      UniProtKB/TrEMBL
      B9FR76
      Conserved Domains (2) summary
      pfam08879
      Location:98 → 139
      WRC
      pfam08880
      Location:25 → 58
      QLQ

    RNA

    1. XR_001546468.3 RNA Sequence

    2. XR_001546469.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6AWY4.1 GenPept UniProtKB/Swiss-Prot:Q6AWY4

    Gene LinkOut

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