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    LOC4340363 glutamate receptor 2.8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340363, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4340363
    Gene description
    glutamate receptor 2.8
    Locus tag
    OSNPB_060190800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 11.2), flower buds (RPKM 10.4) and 6 other tissues See more
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    Genomic context

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    See LOC4340363 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (4758298..4762363, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (4593912..4597981, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene glutamate receptor 2.8 Neighboring gene glutamate receptor 2.8 Neighboring gene uncharacterized LOC136356902 Neighboring gene transfer RNA lysine (anticodon UUU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ligand-gated monoatomic ion channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glutamate receptor 2.8
    Names
    OSJNBa0090D06.32
    Os06g0190800
    putative Avr9/Cf-9 rapidly elicited protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      4758298..4762363 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787425.3 → XP_015642911.1  glutamate receptor 2.8 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WTF1
      Conserved Domains (2) summary
      cd13686
      Location:248 → 591
      GluR_Plant; Plant glutamate receptor domain; the type 2 periplasmic binding protein fold
      cl10011
      Location:1 → 206
      Periplasmic_Binding_Protein_type1; Type 1 periplasmic binding fold superfamily

    2. XM_015787426.3 → XP_015642912.1  glutamate receptor 2.8 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WTF1, B7EY02, Q69TK2
      Conserved Domains (2) summary
      cd13686
      Location:248 → 592
      GluR_Plant; Plant glutamate receptor domain; the type 2 periplasmic binding protein fold
      cl10011
      Location:1 → 206
      Periplasmic_Binding_Protein_type1; Type 1 periplasmic binding fold superfamily
    Nucleotide Protein
    Heading Accession and Version

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