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    LOC4340574 NEP1-interacting protein-like 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340574, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4340574
    Gene description
    NEP1-interacting protein-like 2
    Locus tag
    OSNPB_060231600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0479H10.2
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    Genomic context

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    See LOC4340574 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (6977755..6980175, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (6809589..6811958, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g15300 Neighboring gene casparian strip membrane protein 3 Neighboring gene protein BOBBER 1 Neighboring gene pentatricopeptide repeat-containing protein At5g06540 Neighboring gene uncharacterized protein At5g39570 Neighboring gene probable serine/threonine-protein kinase SIS8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    NEP1-interacting protein-like 2
    Names
    Os06g0231600
    putative NEP1-interacting protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      6977755..6980175 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786489.3 → XP_015641975.1  NEP1-interacting protein-like 2 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WUQ6, A0A8J8YJR3, B8B4A0, B9FSC2, Q67UL9
      Conserved Domains (2) summary
      COG5219
      Location:130 → 223
      COG5219; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      cd16454
      Location:181 → 223
      RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family

    2. XM_015786490.3 → XP_015641976.1  NEP1-interacting protein-like 2 isoform X2

      UniProtKB/TrEMBL
      Q67UL9
      Conserved Domains (2) summary
      COG5219
      Location:103 → 195
      COG5219; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      cd16454
      Location:153 → 195
      RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family
    Nucleotide Protein
    Heading Accession and Version

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