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    LOC4341034 beta-1,2-xylosyltransferase XYXT1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341034, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4341034
    Gene description
    beta-1,2-xylosyltransferase XYXT1-like
    Locus tag
    OSNPB_060475400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 24.1), roots before flowering (RPKM 11.0) and 6 other tissues See more
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    Genomic context

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    See LOC4341034 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (16816353..16821778, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (15968724..15974083, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC136356960 Neighboring gene uncharacterized LOC4341035 Neighboring gene protein FAR1-RELATED SEQUENCE 5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-1,2-xylosyltransferase XYXT1-like
    Names
    Os06g0475400
    P0021H10.18
    putative HGA1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      16816353..16821778 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787924.3 → XP_015643410.1  beta-1,2-xylosyltransferase XYXT1-like

      UniProtKB/TrEMBL
      A0A0P0WWL5, A0A976SMA0, Q0DC74, Q69Y34
      Conserved Domains (1) summary
      cl15705
      Location:279 → 451
      DUF563; Protein of unknown function (DUF563)
    Nucleotide Protein
    Heading Accession and Version

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