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    LOC4341072 ubiquitin-like-specific protease 1D [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341072, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4341072
    Gene description
    ubiquitin-like-specific protease 1D
    Locus tag
    OSNPB_060487900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4341072 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (17582119..17594857, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (16732926..16745674, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic Neighboring gene uncharacterized LOC112939233 Neighboring gene proline-rich receptor-like protein kinase PERK8 Neighboring gene myosin-11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin-like-specific protease 1D
    Names
    Os06g0487900
    P0583E12.4-1
    Ulp1 protease-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      17582119..17594857 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788604.3 → XP_015644090.1  ubiquitin-like-specific protease 1D isoform X2

      UniProtKB/TrEMBL
      B8B2F9
      Conserved Domains (1) summary
      COG5160
      Location:190 → 450
      ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

    2. XM_015788603.3 → XP_015644089.1  ubiquitin-like-specific protease 1D isoform X1

      UniProtKB/TrEMBL
      B8B2F9, Q0DC40, Q67VX6
      Conserved Domains (1) summary
      COG5160
      Location:213 → 473
      ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version

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