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    LOC4341476 EIN3-binding F-box protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341476, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4341476
    Gene description
    EIN3-binding F-box protein 1
    Locus tag
    OSNPB_060605900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 57.5), flowers (RPKM 45.8) and 6 other tissues See more
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    Genomic context

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    See LOC4341476 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (24895639..24898755)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (24033625..24036792)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276149 Neighboring gene transcription factor GAMYB Neighboring gene CBL-interacting protein kinase 24-like Neighboring gene uncharacterized LOC107281396

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SCF ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    EIN3-binding F-box protein 1
    Names
    F-box domain and LRR containing protein
    Os06g0605900
    P0481H08.34
    putative F-box protein Fbl2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      24895639..24898755
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787597.3 → XP_015643083.1  EIN3-binding F-box protein 1

      UniProtKB/TrEMBL
      A0A0P0WYH5, A2YET8, A3BDE3, Q69X07
      Conserved Domains (3) summary
      cd09293
      Location:236 → 436
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:213 → 238
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam00646
      Location:75 → 122
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version

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