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    LOC4341767 receptor-like cytosolic serine/threonine-protein kinase RBK1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341767, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341767
    Gene description
    receptor-like cytosolic serine/threonine-protein kinase RBK1
    Locus tag
    OSNPB_060663900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves after flowering (RPKM 25.0), flower buds (RPKM 23.1) and 5 other tissues See more
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    Genomic context

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    See LOC4341767 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (28278321..28282869)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (27412635..27417509)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4341765 Neighboring gene uncharacterized LOC112939244 Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic Neighboring gene uncharacterized LOC112939332 Neighboring gene aminopeptidase P1 Neighboring gene fructose-1,6-bisphosphatase, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    receptor-like cytosolic serine/threonine-protein kinase RBK1
    Names
    OSJNBb0065C04.50-1
    OSJNBb0065C04.50-2
    OSJNBb0065C04.50-3
    Os06g0663900
    putative receptor protein kinase PERK1
    receptor protein kinase PERK1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      28278321..28282869
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787384.3 → XP_015642870.1  receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1

      UniProtKB/TrEMBL
      B8B115, B9FQD4, Q0DAB4, Q653Y9
      Conserved Domains (1) summary
      cl21453
      Location:240 → 484
      PKc_like; Protein Kinases, catalytic domain

    2. XM_015787385.3 → XP_015642871.1  receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2

      UniProtKB/TrEMBL
      B8B115
      Conserved Domains (2) summary
      pfam00069
      Location:218 → 455
      Pkinase; Protein kinase domain
      cl21453
      Location:224 → 468
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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