U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4343487 glucan endo-1,3-beta-glucosidase GIV [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343487, updated on 12-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4343487
    Gene description
    glucan endo-1,3-beta-glucosidase GIV
    Locus tag
    OSNPB_070539100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4343487 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (21451011..21453668, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (21223192..21225906, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene cysteine-rich receptor-like protein kinase 6 Neighboring gene glucan endo-1,3-beta-glucosidase 13-like Neighboring gene uncharacterized LOC9266571 Neighboring gene glucan endo-1,3-beta-glucosidase

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    glucan endo-1,3-beta-glucosidase GIV
    Names
    Os07g0539100
    P0696F12.28
    putative beta-1,3-glucanase

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      21451011..21453668 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792068.3 → XP_015647554.1  glucan endo-1,3-beta-glucosidase GIV isoform X2

      UniProtKB/TrEMBL
      B9FXP8, Q0D5S6, Q6YVU7
      Conserved Domains (2) summary
      smart00768
      Location:464 → 546
      X8; Possibly involved in carbohydrate binding
      cl23725
      Location:29 → 366
      Glyco_hydro; Glycosyl hydrolases

    2. XM_015792069.3 → XP_015647555.1  glucan endo-1,3-beta-glucosidase GIV isoform X2

      UniProtKB/TrEMBL
      B9FXP8, Q0D5S6, Q6YVU7
      Conserved Domains (2) summary
      smart00768
      Location:464 → 546
      X8; Possibly involved in carbohydrate binding
      cl23725
      Location:29 → 366
      Glyco_hydro; Glycosyl hydrolases

    3. XM_026027095.2 → XP_025882880.1  glucan endo-1,3-beta-glucosidase GIV isoform X1

      UniProtKB/TrEMBL
      B9FXP8
      Conserved Domains (2) summary
      smart00768
      Location:499 → 581
      X8; Possibly involved in carbohydrate binding
      cl23725
      Location:64 → 401
      Glyco_hydro_1; Glycosyl hydrolase family 1

    4. XM_026027093.2 → XP_025882878.1  glucan endo-1,3-beta-glucosidase GIV isoform X1

      UniProtKB/TrEMBL
      B9FXP8
      Conserved Domains (2) summary
      smart00768
      Location:499 → 581
      X8; Possibly involved in carbohydrate binding
      cl23725
      Location:64 → 401
      Glyco_hydro_1; Glycosyl hydrolase family 1

    5. XM_026027094.2 → XP_025882879.1  glucan endo-1,3-beta-glucosidase GIV isoform X1

      UniProtKB/TrEMBL
      B9FXP8
      Conserved Domains (2) summary
      smart00768
      Location:499 → 581
      X8; Possibly involved in carbohydrate binding
      cl23725
      Location:64 → 401
      Glyco_hydro_1; Glycosyl hydrolase family 1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials