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    LOC4344064 uncharacterized LOC4344064 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344064, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344064
    Gene description
    uncharacterized LOC4344064
    Locus tag
    OSNPB_070641000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1340_C08.142
    Expression
    Biased expression in flowers (RPKM 8.3), flower buds (RPKM 3.3) and 3 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (26904171..26907578, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (26677051..26680489, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278726 Neighboring gene heat stress transcription factor B-4b-like Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene calcium/calmodulin-dependent serine/threonine-protein kinase 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4344064
    Names
    Os07g0641000
    P0524G08.109

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      26904171..26907578 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790161.3 → XP_015645647.1  uncharacterized protein LOC4344064 isoform X1

      UniProtKB/TrEMBL
      B8B534
      Conserved Domains (1) summary
      cl16914
      Location:225 → 368
      O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins

    2. XM_026026924.2 → XP_025882709.1  uncharacterized protein LOC4344064 isoform X1

      UniProtKB/TrEMBL
      B8B534
      Conserved Domains (1) summary
      cl16914
      Location:225 → 368
      O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins

    3. XM_026026925.2 → XP_025882710.1  uncharacterized protein LOC4344064 isoform X2

      Conserved Domains (1) summary
      cl16914
      Location:5 → 148
      O-FucT_like; GDP-fucose protein O-fucosyltransferase and related proteins
    Nucleotide Protein
    Heading Accession and Version

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