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    LOC4344328 nuclear pore complex protein NUP214 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344328, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4344328
    Gene description
    nuclear pore complex protein NUP214
    Locus tag
    OSNPB_070685400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1200_C08.101
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 10.7), roots after flowering (RPKM 10.1) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29330512..29343327, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29096659..29109486, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene cyclic dof factor 2 Neighboring gene myb-related protein 1 Neighboring gene probable lysophospholipase BODYGUARD 4 Neighboring gene uncharacterized LOC112939602 Neighboring gene U2 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear pore complex protein NUP214
    Names
    OSJNBa0060O17.36
    OSJNBa0060O17.37
    Os07g0685400
    fibroin heavy chain precursor-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      29330512..29343327 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791081.3 → XP_015646567.1  nuclear pore complex protein NUP214 isoform X2

      UniProtKB/TrEMBL
      B8B647
      Conserved Domains (1) summary
      pfam03157
      Location:1535 → 1624
      Glutenin_hmw; High molecular weight glutenin subunit

    2. XM_066312074.1 → XP_066168171.1  nuclear pore complex protein NUP214 isoform X1

      UniProtKB/TrEMBL
      B8B647, B9FUY2
    Nucleotide Protein
    Heading Accession and Version

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