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    LOC4344688 uncharacterized LOC4344688 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344688, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344688
    Gene description
    uncharacterized LOC4344688
    Locus tag
    OSNPB_080155000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1177_E11.4-1; OJ1177_E11.4-2
    Expression
    Ubiquitous expression in mature seeds (RPKM 29.0), flower buds (RPKM 26.5) and 6 other tissues See more
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    Genomic context

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    See LOC4344688 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (3180638..3184382, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (3166749..3170551, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene sm-like protein LSM2 Neighboring gene small nucleolar RNA snoR134 Neighboring gene oxysterol-binding protein-related protein 2A Neighboring gene vesicle-associated protein 1-3 Neighboring gene protein NRT1/ PTR FAMILY 6.3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables rRNA primary transcript binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables snoRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Mpp10 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4344688
    Names
    Os08g0155000
    U3 small nucleolar ribonucleoprotein protein IMP4
    putative U3 snoRNP protein IMP4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      3180638..3184382 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792717.3 → XP_015648203.1  uncharacterized protein LOC4344688

      UniProtKB/TrEMBL
      A0A0P0XBT9, B9FZ49, Q6ZJR6
      Conserved Domains (1) summary
      smart00879
      Location:86 → 257
      Brix; The Brix domain is found in a number of eukaryotic proteins
    Nucleotide Protein
    Heading Accession and Version

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