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    LOC4345664 polypyrimidine tract-binding protein homolog 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345664, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345664
    Gene description
    polypyrimidine tract-binding protein homolog 1
    Locus tag
    OSNPB_080436000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4345664 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (21311255..21316970, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (21173460..21179196, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4345662 Neighboring gene chlorophyll a-b binding protein P4, chloroplastic Neighboring gene probable apyrase 6 Neighboring gene uncharacterized LOC4345666

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polypyrimidine tract-binding protein homolog 1
    Names
    Os08g0436000
    P0413H11.37
    putative polypyrimidine tract-binding protein homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      21311255..21316970 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794240.2 → XP_015649726.1  polypyrimidine tract-binding protein homolog 1 isoform X2

      Conserved Domains (3) summary
      cd12686
      Location:15 → 95
      RRM1_PTBPH1_PTBPH2; RNA recognition motif 1 in plant polypyrimidine tract-binding protein homolog 1 and 2 (PTBPH1 and PTBPH2)
      cd12691
      Location:109 → 203
      RRM2_PTBPH1_PTBPH2; RNA recognition motif 2 in plant polypyrimidine tract-binding protein homolog 1 and 2 (PTBPH1 and PTBPH2)
      cl17169
      Location:242 → 313
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_015794239.2 → XP_015649725.1  polypyrimidine tract-binding protein homolog 1 isoform X1

      UniProtKB/TrEMBL
      A0A0P0XG05, B8BB16, Q0J5G6, Q6YWJ5
      Conserved Domains (3) summary
      cd12691
      Location:109 → 203
      RRM2_PTBPH1_PTBPH2; RNA recognition motif 2 (RRM2) found in plant polypyrimidine tract-binding protein homolog 1 and 2 (PTBPH1 and PTBPH2)
      cd12686
      Location:15 → 95
      RRM1_PTBPH1_PTBPH2; RNA recognition motif 1 (RRM1) found in plant polypyrimidine tract-binding protein homolog 1 and 2 (PTBPH1 and PTBPH2)
      cd12690
      Location:242 → 338
      RRM3_PTBPH1_PTBPH2; RNA recognition motif 3 (RRM3) found in plant polypyrimidine tract-binding protein homolog 1 and 2 (PTBPH1 and PTBPH2)

    RNA

    1. XR_010734423.1 RNA Sequence

    2. XR_010734428.1 RNA Sequence

    3. XR_001548204.2 RNA Sequence

    4. XR_010734427.1 RNA Sequence

    5. XR_010734426.1 RNA Sequence

    6. XR_010734425.1 RNA Sequence

    7. XR_001548202.2 RNA Sequence

    8. XR_010734424.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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