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    LOC4345870 E3 ubiquitin-protein ligase ATL6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345870, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4345870
    Gene description
    E3 ubiquitin-protein ligase ATL6
    Locus tag
    OSNPB_080484200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1111_H02.30
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    Genomic context

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    See LOC4345870 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (24060836..24062417)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (23920683..23922588)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene transcription factor bHLH94 Neighboring gene probable glucan 1,3-beta-glucosidase A Neighboring gene large ribosomal subunit protein uL6m Neighboring gene uncharacterized LOC4345871

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase ATL6
    Names
    Os08g0484200
    P0419H09.11
    putative RING-H2 zinc finger protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      24060836..24062417
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793410.3 → XP_015648896.1  E3 ubiquitin-protein ligase ATL6

      UniProtKB/TrEMBL
      A0A0P0XHB6, A2YWD6, Q6YTT7
      Conserved Domains (1) summary
      cd16454
      Location:144 → 187
      RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family
    Nucleotide Protein
    Heading Accession and Version

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