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    LOC4345969 beta-(1,2)-xylosyltransferase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345969, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345969
    Gene description
    beta-(1,2)-xylosyltransferase
    Locus tag
    OSNPB_080503800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    xt; RCN11; OsXylT; OJ1506_F01.30
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 5.8), roots after flowering (RPKM 5.7) and 6 other tissues See more
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    Genomic context

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    See LOC4345969 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (25033356..25037459)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (24887575..24891938)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene glycerophosphodiester phosphodiesterase GDPDL3 Neighboring gene tonoplast dicarboxylate transporter Neighboring gene uncharacterized LOC112939876 Neighboring gene uncharacterized LOC136351354 Neighboring gene zinc finger protein WIP2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A genetic and structural analysis of the N-glycosylation capabilities. Léonard R, et al. Plant Mol Biol, 2004 Jul. PMID 15604706
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-1,2-xylosyltransferase RCN11
    Names
    Beta-1,2-xylosyltransferase RCN11
    LOC_Os08g39380
    Protein REDUCED CULM NUMBER 11
    putative beta 1,2-xylosyltransferase
    NP_001409548.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422619.1 → NP_001409548.1  beta-1,2-xylosyltransferase RCN11

      Status: VALIDATED

      Source sequence(s)
      AJ621918, AK101954
      UniProtKB/Swiss-Prot
      Q6ZFH6, Q703H0, Q703H1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      25033356..25037459
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6ZFH6.1 GenPept UniProtKB/Swiss-Prot:Q6ZFH6

    Gene LinkOut

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