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    LOC4347141 E3 ubiquitin-protein ligase AIP2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347141, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4347141
    Gene description
    E3 ubiquitin-protein ligase AIP2
    Locus tag
    OSNPB_090434200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1081_G10.20
    Expression
    Ubiquitous expression in flowers (RPKM 62.3), flower buds (RPKM 56.7) and 6 other tissues See more
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    Genomic context

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    See LOC4347141 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (20324178..20327449, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (15944550..15947912, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene alanine aminotransferase 2 Neighboring gene AT-rich interactive domain-containing protein 4 Neighboring gene ethylene-responsive transcription factor 1-like Neighboring gene uncharacterized LOC136351232 Neighboring gene uncharacterized LOC4347143

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase AIP2
    Names
    Os09g0434200
    putative ABI3-interacting protein 2, AIP2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      20324178..20327449 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757197.3 → XP_015612683.1  E3 ubiquitin-protein ligase AIP2

      UniProtKB/TrEMBL
      A0A0P0XNI1, A2Z1K5, B7E748, Q69PH7
      Conserved Domains (2) summary
      PHA02926
      Location:180 → 285
      PHA02926; zinc finger-like protein; Provisional
      cl17238
      Location:239 → 281
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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