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    LOC4347844 organic cation/carnitine transporter 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347844, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4347844
    Gene description
    organic cation/carnitine transporter 7
    Locus tag
    OSNPB_090559800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1065_E04.20
    Expression
    Ubiquitous expression in flowers (RPKM 11.2), roots before flowering (RPKM 10.5) and 6 other tissues See more
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    Genomic context

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    See LOC4347844 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (26683942..26687987)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (22239397..22243488)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene protein PLASTID MOVEMENT IMPAIRED 1 Neighboring gene thioredoxin H2-2-like Neighboring gene uncharacterized LOC9267744 Neighboring gene protein STRUBBELIG-RECEPTOR FAMILY 5 Neighboring gene TORTIFOLIA1-like protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    organic cation/carnitine transporter 7
    Names
    Os09g0559800
    putative SV2 related protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      26683942..26687987
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795826.3 → XP_015651312.1  organic cation/carnitine transporter 7 isoform X2

      UniProtKB/TrEMBL
      B9G515
      Conserved Domains (1) summary
      cl28910
      Location:5 → 390
      MFS; Major Facilitator Superfamily

    2. XM_015795825.3 → XP_015651311.1  organic cation/carnitine transporter 7 isoform X1

      UniProtKB/TrEMBL
      B9G515, Q0IZN1, Q653R2
      Conserved Domains (1) summary
      cl28910
      Location:27 → 475
      MFS; Major Facilitator Superfamily
    Nucleotide Protein
    Heading Accession and Version

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