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    LOC4348574 cytochrome P450 78A11-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348574, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4348574
    Gene description
    cytochrome P450 78A11-like
    Locus tag
    OSNPB_100403000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PLA1; CYP78A11
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    Genomic context

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    See LOC4348574 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (14312062..14314334, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (13658365..13660641, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene phenolic glucoside malonyltransferase 1 Neighboring gene uncharacterized LOC136353782 Neighboring gene protein MAIN-LIKE 1-like Neighboring gene uncharacterized LOC136353492

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PLASTOCHRON1, a timekeeper of leaf initiation in rice, encodes cytochrome P450. Miyoshi K, et al. Proc Natl Acad Sci U S A, 2004 Jan 20. PMID 14711998, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytochrome P450 78A11
    Names
    LOC_Os10g26340
    OSJNBa0044A10.17
    Protein PLASTOCHRON1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423023.1 → NP_001409952.1  cytochrome P450 78A11

      Status: VALIDATED

      Source sequence(s)
      AB096259, AP014966
      UniProtKB/Swiss-Prot
      A0A0P0XUQ2, Q0IY05, Q7Y1V5, Q8LND2
      UniProtKB/TrEMBL
      A2Z725

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      14312062..14314334 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7Y1V5.2 GenPept UniProtKB/Swiss-Prot:Q7Y1V5

    Gene LinkOut

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