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    LOC4348816 uncharacterized LOC4348816 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348816, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4348816
    Gene description
    uncharacterized LOC4348816
    Locus tag
    OSNPB_100460900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 83.2), flowers (RPKM 33.5) and 5 other tissues See more
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    Genomic context

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    See LOC4348816 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (17628327..17643373, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (16950899..16976825, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136353557 Neighboring gene tetratricopeptide repeat domain-containing protein PYG7, chloroplastic Neighboring gene psbP-like protein 1, chloroplastic Neighboring gene uncharacterized LOC112936690

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in photosynthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extrinsic component of membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of photosystem II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of photosystem II oxygen evolving complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4348816
    Names
    Os10g0460900
    Os10g0461100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      17628327..17643373 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758691.3 → XP_015614177.1  uncharacterized protein LOC4348816 isoform X2

      UniProtKB/TrEMBL
      Q109L1
      Conserved Domains (2) summary
      sd00004
      Location:104 → 133
      PPR; PPR repeat [structural motif]
      pfam01789
      Location:316 → 470
      PsbP; PsbP

    2. XM_015758689.2 → XP_015614175.1  uncharacterized protein LOC4348816 isoform X1

      UniProtKB/TrEMBL
      Q0IX75, Q109L0, Q109L1
      Conserved Domains (2) summary
      sd00004
      Location:104 → 133
      PPR; PPR repeat [structural motif]
      pfam01789
      Location:365 → 519
      PsbP; PsbP
    Nucleotide Protein
    Heading Accession and Version

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