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    LOC4348834 bifunctional riboflavin kinase/FMN phosphatase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348834, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4348834
    Gene description
    bifunctional riboflavin kinase/FMN phosphatase
    Locus tag
    OSNPB_100464400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GLN
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    Genomic context

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    See LOC4348834 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (17800065..17804591, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (17133157..17137862, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112936634 Neighboring gene hypersensitive-induced reaction 1 protein Neighboring gene uncharacterized LOC4348832 Neighboring gene membrane protein PM19L-like Neighboring gene E3 ubiquitin-protein ligase WAV3 Neighboring gene E3 ubiquitin-protein ligase WAV3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables riboflavin kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in FMN biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in riboflavin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bifunctional riboflavin kinase/FMN phosphatase
    Names
    GS1-like protein
    Os10g0464400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      17800065..17804591 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759372.3 → XP_015614858.1  bifunctional riboflavin kinase/FMN phosphatase isoform X2

      UniProtKB/TrEMBL
      A2Z899, Q109K4
      Conserved Domains (3) summary
      PLN02940
      Location:1 → 382
      PLN02940; riboflavin kinase
      pfam01687
      Location:238 → 363
      Flavokinase; Riboflavin kinase
      cl21460
      Location:18 → 228
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    2. XM_015759371.2 → XP_015614857.1  bifunctional riboflavin kinase/FMN phosphatase isoform X1

      UniProtKB/TrEMBL
      A2Z899, A3C5J0, Q8H921
      Conserved Domains (1) summary
      PLN02940
      Location:1 → 382
      PLN02940; riboflavin kinase
    Nucleotide Protein
    Heading Accession and Version

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