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    LOC4348888 uncharacterized protein At1g03900 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348888, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4348888
    Gene description
    uncharacterized protein At1g03900
    Locus tag
    OSNPB_100476000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 25.9), flower buds (RPKM 20.3) and 6 other tissues See more
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    Genomic context

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    See LOC4348888 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (18393644..18403358)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (17726411..17736243)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene long-chain-alcohol oxidase FAO1 Neighboring gene polyubiquitin Neighboring gene uncharacterized LOC4348889 Neighboring gene uncharacterized LOC4348890 Neighboring gene vacuolar protein sorting-associated protein 2 homolog 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptidyl-serine phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of clathrin vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein At1g03900; uncharacterized protein LOC4348888
    Names
    Os10g0476000
    Os10g0476100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      18393644..18403358
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758732.3 → XP_015614218.1  uncharacterized protein LOC4348888 isoform X4

      Conserved Domains (3) summary
      smart00220
      Location:388 → 689
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd05599
      Location:386 → 753
      STKc_NDR_like; Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases
      pfam07933
      Location:12 → 181
      DUF1681; Protein of unknown function (DUF1681)

    2. XM_015758731.3 → XP_015614217.1  uncharacterized protein At1g03900 isoform X3

      UniProtKB/TrEMBL
      A0A5S6RCW6, A2Z8I3, A3C5P8, Q7G7X0, Q7XDE6, Q9AUZ3
      Conserved Domains (1) summary
      pfam07933
      Location:12 → 181
      DUF1681; Protein of unknown function (DUF1681)

    3. XM_015758726.3 → XP_015614212.1  uncharacterized protein LOC4348888 isoform X2

      UniProtKB/TrEMBL
      Q0IX06
      Conserved Domains (1) summary
      cd05599
      Location:136 → 503
      STKc_NDR_like; Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

    4. XM_015758727.3 → XP_015614213.1  uncharacterized protein LOC4348888 isoform X1

      UniProtKB/TrEMBL
      Q0IX06
      Conserved Domains (1) summary
      cd05599
      Location:111 → 478
      STKc_NDR_like; Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases
    Nucleotide Protein
    Heading Accession and Version

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