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    LOC4349978 uncharacterized LOC4349978 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349978, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4349978
    Gene description
    uncharacterized LOC4349978
    Locus tag
    OSNPB_110191300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4349978 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (4669236..4678456)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (4614155..4623390)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene parkeol synthase-like Neighboring gene probable NAD kinase 2, chloroplastic Neighboring gene uncharacterized LOC136353830 Neighboring gene probable NAD kinase 2, chloroplastic Neighboring gene uncharacterized LOC4349980

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in DNA replication initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic DNA replication checkpoint signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic G2 DNA damage checkpoint signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4349978
    Names
    DNA topoisomerase 2-binding protein 1-A
    Os11g0191300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      4669236..4678456
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761495.3 → XP_015616981.1  uncharacterized protein LOC4349978

      UniProtKB/TrEMBL
      B8BJJ5
      Conserved Domains (4) summary
      cd00027
      Location:121 → 188
      BRCT; C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains
      cd17731
      Location:203 → 279
      BRCT_TopBP1_rpt2_like; second BRCT domain of DNA topoisomerase 2-binding protein 1 (TopBP1) and similar proteins
      pfam12738
      Location:675 → 736
      PTCB-BRCT; twin BRCT domain
      cl00038
      Location:373 → 457
      BRCT; C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains
    Nucleotide Protein
    Heading Accession and Version

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