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    LOC4350416 tropinone reductase homolog At5g06060 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350416, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4350416
    Gene description
    tropinone reductase homolog At5g06060
    Locus tag
    OSNPB_110438700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots after flowering (RPKM 13.9), leaves after flowering (RPKM 13.1) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (16185836..16191375)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (14330186..14336158)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene tropinone reductase 1 Neighboring gene uncharacterized LOC9271789 Neighboring gene uncharacterized LOC136353914 Neighboring gene uncharacterized LOC136354173 Neighboring gene uncharacterized LOC136353913 Neighboring gene tropinone reductase homolog At5g06060-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tropinone reductase homolog At2g29150; tropinone reductase homolog At5g06060
    Names
    Os11g0438700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      16185836..16191375
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761456.3 → XP_015616942.1  tropinone reductase homolog At5g06060 isoform X1

      UniProtKB/TrEMBL
      Q0ISZ3, Q2R5F6
      Conserved Domains (1) summary
      cl21454
      Location:12 → 260
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

    2. XM_026021486.2 → XP_025877271.1  tropinone reductase homolog At2g29150 isoform X2

      Conserved Domains (1) summary
      cl25409
      Location:12 → 173
      SDR; Short-chain dehydrogenases/reductases (SDR)

    RNA

    1. XR_001541392.3 RNA Sequence

    2. XR_001541393.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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