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    LOC4350782 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350782, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4350782
    Gene description
    putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
    Locus tag
    OSNPB_110579800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4350782 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (23826062..23827963)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (21890399..21892397)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene probable F-box protein At4g22165 Neighboring gene protein SUPPRESSOR OF GENE SILENCING 3 homolog Neighboring gene pumilio domain-containing protein C6G9.14 Neighboring gene protein SINE1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables box H/ACA snoRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in snoRNA guided rRNA pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of box H/ACA snoRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative H/ACA ribonucleoprotein complex subunit 1-like protein 1
    Names
    Os11g0579800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      23826062..23827963
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759987.3 → XP_015615473.1  putative H/ACA ribonucleoprotein complex subunit 1-like protein 1

      UniProtKB/TrEMBL
      A3CCM1, Q2R242
      Conserved Domains (1) summary
      pfam04410
      Location:46 → 140
      Gar1; Gar1/Naf1 RNA binding region
    Nucleotide Protein
    Heading Accession and Version

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