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    LOC4351174 importin beta-like SAD2 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351174, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4351174
    Gene description
    importin beta-like SAD2 homolog
    Locus tag
    OSNPB_110695900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 11.8), roots after flowering (RPKM 10.7) and 6 other tissues See more
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    Genomic context

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    See LOC4351174 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (30426844..30434577, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (28462068..28469811, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene receptor kinase-like protein Xa21 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At3g47570 Neighboring gene uncharacterized LOC136354122 Neighboring gene ATP-citrate synthase alpha chain protein 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear export signal receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nuclear envelope IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    importin beta-like SAD2 homolog
    Names
    Os11g0695900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      30426844..30434577 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759604.3 → XP_015615090.1  importin beta-like SAD2 homolog isoform X2

      UniProtKB/TrEMBL
      A0A679BAS1, Q2QZ89
      Conserved Domains (2) summary
      smart00913
      Location:45 → 106
      IBN_N; Importin-beta N-terminal domain
      COG5656
      Location:17 → 639
      SXM1; Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

    2. XM_015759603.3 → XP_015615089.1  importin beta-like SAD2 homolog isoform X1

      UniProtKB/TrEMBL
      A0A679BAS1, Q2QZ88
      Conserved Domains (2) summary
      smart00913
      Location:45 → 106
      IBN_N; Importin-beta N-terminal domain
      COG5656
      Location:17 → 639
      SXM1; Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version

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