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    LOC4351977 cystinosin homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351977, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4351977
    Gene description
    cystinosin homolog
    Locus tag
    OSNPB_120278700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4351977 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (10479012..10486943, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (10417663..10425823, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107279582 Neighboring gene uncharacterized LOC112937360 Neighboring gene zinc finger CCCH domain-containing protein 65-like Neighboring gene uncharacterized LOC4351979

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-cystine transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-cystine transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in vacuolar membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cystinosin homolog
    Names
    Os12g0278700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      10479012..10486943 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765313.3 → XP_015620799.1  cystinosin homolog isoform X3

      Conserved Domains (2) summary
      TIGR00951
      Location:11 → 243
      2A43; Lysosomal Cystine Transporter
      pfam04193
      Location:14 → 71
      PQ-loop; PQ loop repeat

    2. XM_015765312.2 → XP_015620798.1  cystinosin homolog isoform X2

      UniProtKB/TrEMBL
      A0A8J8Y9Z1, B8BP39, B9GCN0, Q0INX8, Q2QTY5
      Conserved Domains (1) summary
      TIGR00951
      Location:11 → 243
      2A43; Lysosomal Cystine Transporter

    3. XM_015765310.3 → XP_015620796.1  cystinosin homolog isoform X1

      UniProtKB/TrEMBL
      Q2QTY6
      Conserved Domains (1) summary
      TIGR00951
      Location:11 → 243
      2A43; Lysosomal Cystine Transporter
    Nucleotide Protein
    Heading Accession and Version

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