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    LOC4352177 spermidine hydroxycinnamoyltransferase 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352177, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4352177
    Gene description
    spermidine hydroxycinnamoyltransferase 2-like
    Locus tag
    OSNPB_120458100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4352177 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (16443830..16451037, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (15998290..16005485, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene spermidine hydroxycinnamoyltransferase 1 Neighboring gene uncharacterized LOC136354559 Neighboring gene spermidine hydroxycinnamoyltransferase 2 Neighboring gene uncharacterized LOC4352178

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    spermidine hydroxycinnamoyltransferase 2
    Names
    LOC_Os12g27254
    Os12g0458100
    Spermidine hydroxycinnamoyltransferase 2
    NP_001410427.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423498.1 → NP_001410427.1  spermidine hydroxycinnamoyltransferase 2

      Status: VALIDATED

      Source sequence(s)
      AK065433, AP014968
      UniProtKB/Swiss-Prot
      Q0ING3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      16443830..16451037 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0ING3.1 GenPept UniProtKB/Swiss-Prot:Q0ING3

    Gene LinkOut

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