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    LOC4352285 ureide permease 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352285, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4352285
    Gene description
    ureide permease 2
    Locus tag
    OSNPB_120502800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4352285 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (19650077..19654746, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (19161737..19206735, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene deaminated glutathione amidase, chloroplastic/cytosolic Neighboring gene DNAJ protein JJJ1 homolog Neighboring gene ureide permease 2 Neighboring gene eukaryotic translation initiation factor 5B Neighboring gene eukaryotic translation initiation factor 5B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables allantoin:proton symporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables uracil:monoatomic cation symporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nitrogen compound transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ureide permease 2
    Names
    Os12g0502800
    Os12g0503300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      19650077..19654746 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763887.3 → XP_015619373.1  ureide permease 2 isoform X1

      UniProtKB/TrEMBL
      A0A0N7KU29, B7EMP2, Q0IN64
      Conserved Domains (1) summary
      pfam07168
      Location:41 → 403
      Ureide_permease; Ureide permease

    2. XM_015763884.3 → XP_015619370.2  ureide permease 2 isoform X1

      UniProtKB/TrEMBL
      A0A0N7KU29, B7EMP2, Q0IN64

    3. XM_015763892.3 → XP_015619378.2  ureide permease 2 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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