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    LOC4352490 probable galactinol--sucrose galactosyltransferase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352490, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4352490
    Gene description
    probable galactinol--sucrose galactosyltransferase 2
    Locus tag
    OSNPB_120555400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4352490 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (23285410..23286562)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (22597797..22598947)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene major pollen allergen Bet v 1-D/H Neighboring gene major pollen allergen Bet v 1-G Neighboring gene major pollen allergen Bet v 1-D/H Neighboring gene cellulose synthase-like protein D4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables raffinose alpha-galactosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable galactinol--sucrose galactosyltransferase 2
    Names
    Os12g0555400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      23285410..23286562
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764895.3 → XP_015620381.1  probable galactinol--sucrose galactosyltransferase 2 isoform X3

      UniProtKB/TrEMBL
      Q2QNS8
      Conserved Domains (1) summary
      cl07893
      Location:12 → 164
      AmyAc_family; Alpha amylase catalytic domain family

    2. XM_015764894.3 → XP_015620380.1  probable galactinol--sucrose galactosyltransferase 2 isoform X2

      Conserved Domains (1) summary
      cl38930
      Location:5 → 181
      AmyAc_family; Alpha amylase catalytic domain family

    3. XM_066306595.1 → XP_066162692.1  probable galactinol--sucrose galactosyltransferase 2 isoform X1

      UniProtKB/TrEMBL
      B9GDP8
    Nucleotide Protein
    Heading Accession and Version

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