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    LOC4352505 lipoxygenase 2.1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352505, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4352505
    Gene description
    lipoxygenase 2.1, chloroplastic
    Locus tag
    OSNPB_120559200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LOX2; LOX11
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    Genomic context

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    See LOC4352505 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (23542941..23548572, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (22854588..22860224, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene F-box protein At5g03100 Neighboring gene uncharacterized LOC112937476 Neighboring gene disease resistance protein PIK6-NP-like Neighboring gene disease resistance protein Pik-2-like Neighboring gene disease resistance protein Pik-2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid oxidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lipoxygenase 2.1, chloroplastic
    Names
    Os12g0559200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      23542941..23548572 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765151.3 → XP_015620637.1  lipoxygenase 2.1, chloroplastic isoform X1

      UniProtKB/TrEMBL
      B1PYP0, Q0IMN5, Q2QNN5, Q9FSE5
      Conserved Domains (2) summary
      pfam00305
      Location:215 → 900
      Lipoxygenase
      cl00011
      Location:76 → 202
      PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...

    2. XM_015765152.3 → XP_015620638.1  lipoxygenase 2.1, chloroplastic isoform X2

      Conserved Domains (2) summary
      cd01751
      Location:76 → 202
      PLAT_LH2; PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense ...
      pfam00305
      Location:214 → 476
      Lipoxygenase; Lipoxygenase
    Nucleotide Protein
    Heading Accession and Version

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