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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_021424.2 RefSeqGene
- Range
-
5002..144176
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001278298.2 → NP_001265227.1 collagen alpha-5(VI) chain isoform 1 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the allele encoded by the GRCh38 reference genome and encodes isoform (1).
- Source sequence(s)
-
AC093004, AC117398, KF573676
- Consensus CDS
-
CCDS93384.1
- UniProtKB/Swiss-Prot
- A8TX70, A9J6L2, A9J6L4, A9J6L6, A9J6L7, A9J6M0, A9J6M1, A9J6M2, B5MEA7, Q6ZW26, Q8NA36
- UniProtKB/TrEMBL
-
H0Y393
- Related
- ENSP00000362250.5, ENST00000373157.9
- Conserved Domains (6) summary
-
- pfam01391
Location:1564 → 1623
- Collagen; Collagen triple helix repeat (20 copies)
- COG2304
Location:445 → 593
- YfbK; Secreted protein containing bacterial Ig-like domain and vWFA domain [General function prediction only]
- cd01450
Location:2290 → 2467
- vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
- cd01472
Location:627 → 787
- vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
- pfam00092
Location:814 → 985
- VWA; von Willebrand factor type A domain
- cl00057
Location:29 → 195
- vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
-
NM_001412157.1 → NP_001399086.1 collagen alpha-5(VI) chain isoform 3 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) uses the same exon combination as variant 1 but represents the allele encoded by the T2T-CHM13v2.0 genome assembly. The encoded isoform (3) has a frameshifted C-terminus compared to isoform 1.
- Source sequence(s)
-
CP068275
- UniProtKB/Swiss-Prot
- A8TX70, A9J6L2, A9J6L4, A9J6L6, A9J6L7, A9J6M0, A9J6M1, A9J6M2, B5MEA7, Q6ZW26, Q8NA36
-
NM_153264.7 → NP_694996.5 collagen alpha-5(VI) chain isoform 2 precursor
Status: REVIEWED
- Source sequence(s)
-
AC093004, AC117398, KF573676
- Consensus CDS
-
CCDS93385.1
- UniProtKB/Swiss-Prot
- A8TX70, A9J6L2, A9J6L4, A9J6L6, A9J6L7, A9J6M0, A9J6M1, A9J6M2, B5MEA7, Q6ZW26, Q8NA36
- Related
- ENSP00000422898.2, ENST00000512836.6
- Conserved Domains (6) summary
-
- cd01450
Location:2290 → 2467
- vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
- cd01472
Location:627 → 787
- vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
- pfam01391
Location:1394 → 1447
- Collagen; Collagen triple helix repeat (20 copies)
- pfam00092
Location:814 → 985
- VWA; von Willebrand factor type A domain
- NF038329
Location:1478 → 1730
- gly_rich_SclB; LPXTG-anchored collagen-like adhesin Scl2/SclB
- cl00057
Location:29 → 195
- vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
RNA
-
NR_022012.3 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC093004, AC117398, KF573676
- Related
-
ENST00000312481.11
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000003.12 Reference GRCh38.p14 Primary Assembly
- Range
-
130345672..130484846
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060927.1 Alternate T2T-CHM13v2.0
- Range
-
133089679..133228818
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)